Version 2.20.0 of the Next-Generation Clustered Heat Map (NG-CHM) viewer is now available.
Significant new features in recent versions are listed below:
New features in the NG-CHM RStudio Containers
Version 4.0.1 of the NG-CHM RStudio containers are now available.
New features in the NG-CHM Galaxy Tool
Version 2.3
This release includes a re-engineered system for processing parameters specified in the Galaxy build tool that is a lot more flexible than the previous method. Consequently, we have extended the Advanced NG-CHM Generator tool to include several new capabilities in the NG-CHM that were not possible previously.
How to Examine Pathways in Next Generation Clustered Heat Maps
In this article, we will use the Pathways Tool to investigate the pathways related to gene-expression patterns in a Next-Generation Clustered Heat Map (NG-CHM).
Specifically, we will explore our TCGA THYM rnaSEQ gene by sample map.
The samples in this map have been grouped into four clusters based on hierarchical gene-expression clustering, as shown in the top covariate bar.