Link-outs in NG-CHMs are determined by assigning types to the row and column labels in a heat map. Plugins installed in the heat map viewer provide link-outs to appropriate resources for matching types.
A database describing in detail the available label types is under development.
As an interim measure this page lists the label types recognized by the standard NG-CHM plugins.
| Data Type | Description |
|---|---|
| bio.gene.hugo | The official HUGO symbol for a gene |
| bio.go | A Gene Ontology (GO) identifier |
| Format GO:####### | |
| bio.cbioportal.sampleid | A cBioPortal sampleid. Requires cbioportal.studyid map property. |
| bio.transcriptid | An Entrez transcription identifier |
| Format: ENST########### | |
| bio.mirna | An miRNA identifier |
| bio.mdacc.pathwayid | A Pathway Id as defined by the MD Anderson PathwaysWeb System |
| bio.pathway.msigdb.name | A Pathway Name as defined by the msig DB |
| bio.gene.entrezid | Numeric Id representing a "gene" as defined by NCBI |
| bio.protein.uniprotid | A Uniprot protein identifier. |
| bio.geo.acc | A Gene Expression Omnibus (GEO) accession id |
| Format: integer | |
| bio.pubmed | A PubMed Identifier, (Integer ID) |
| bio.transcript.ensembl | An Ensembl transcript identifier |
| bio.tcga.barcode.sample | First 15 characters of TCGA aliquot barcode |
| bio.tcga.barcode.sample.vial.portion.analyte.aliquot | Full 28 character TCGA aliquot barcode |
| bio.tcga.barcode.sample.vial.portion.analyte | First 20 characters of a TCGA aliquot barcode |
| bio.tcga.barcode.sample.vial.portion | First 19 characters of TCGA aliquot barcode |
| bio.tcga.barcode.sample.vial | First 16 characters of TCGA aliquot barcode |
| scholar | A text string used to search for something in Google Scholar |
| search | A text string used to search for something |